Elnitski, Laura: search on Z-Library

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1

Diversity of core promoter elements comprising human bidirectional promoters

Mary Qu Yang, Laura L Elnitski

Journal:

Year:

2008

Language:

english

File:

PDF, 1.30 MB

english, 2008

2

Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype

Sánchez-Vega, Francisco, Gotea, Valer, Margolin, Gennady, Elnitski, Laura

Journal:

Epigenetics & Chromatin

Year:

2015

Language:

english

File:

PDF, 4.18 MB

english, 2015

3

MUC1 Positive, Kras and Pten Driven Mouse Gynecologic Tumors Replicate Human Tumors and Vary in Survival and Nuclear Grade Based on Anatomical Location

Tirodkar, Tejas S., Budiu, Raluca A., Elishaev, Esther, Zhang, Lixin, Mony, Jyothi T., Brozick, Joan, Edwards, Robert P., Vlad, Anda M., Elnitski, Laura L.

Journal:

Year:

2014

Language:

english

File:

PDF, 8.68 MB

english, 2014

4

A Case of IL-7R Deficiency Caused by a Novel Synonymous Mutation and Implications for Mutation Screening in SCID Diagnosis

Gallego-Bustos, Fernando, Gotea, Valer, Ramos-Amador, José T., Rodríguez-Pena, Rebeca, Gil-Herrera, Juana, Sastre, Ana, Delmiro, Aitor, Rai, Ghadi, Elnitski, Laura, González-Granado, Luis I., Allende,

Journal:

Frontiers in Immunology

Year:

2016

Language:

english

File:

PDF, 883 KB

english, 2016

5

Discovering Gene Regulatory Elements Using Coverage-based Heuristics

Al-Ouran, Rami, Schmidt, Robert, Naik, Ashwini, Jones, Jeffrey, Drews, Frank, Juedes, David, Elnitski, Laura, Welch, Lonnie

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.00 MB

english, 2015

6

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - An Overview of Bidirectional Promoters

Yang, Mary Qu, Elnitski, Laura L.

Year:

2007

Language:

english

File:

PDF, 627 KB

english, 2007

7

The hypothesis of ultraconserved enhancer dispensability overturned

Elnitski, Laura, Ovcharenko, Ivan

Journal:

Year:

2018

Language:

english

File:

PDF, 369 KB

english, 2018

8

DNA methylation profiles unique to Kalahari KhoeSan individuals

Goncearenco, Alexander, LaBarre, Brenna A., Petrykowska, Hanna M., Jaratlerdsiri, Weerachai, Bornman, M. S. Riana, Turner, Stephen D., Hayes, Vanessa M., Elnitski, Laura

Journal:

Year:

2020

File:

PDF, 5.65 MB

2020

9

PhenCode: connecting ENCODE data with mutations and phenotype

Belinda Giardine, Cathy Riemer, Tim Hefferon, Daryl Thomas, Fan Hsu, Julian Zielenski, Yunhua Sang, Laura Elnitski, Garry Cutting, Heather Trumbower, Andrew Kern, Robert Kuhn, George P. Patrinos, Jim

Journal:

Year:

2007

Language:

english

File:

PDF, 627 KB

english, 2007

10

WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures

Jens Lichtenberg, Kyle Kurz, Xiaoyu Liang, Rami Al-ouran, Lev Neiman, Lee J Nau, Joshua D Welch, Edwin Jacox, Thomas Bitterman, Klaus Ecker, Laura Elnitski, Frank Drews, Stephen Sauchi Lee, Lonnie R W

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 790 KB

english, 2010

11

Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes

Yang, Mary Q., Koehly, Laura M., Elnitski, Laura L.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 666 KB

english, 2007

12

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Regulatory network nodes of check point factors in DNA repair pathways

Elnitski, Laura, Lichtenberg, Jens, Welch, Lonnie R.

Year:

2010

Language:

english

File:

PDF, 1.08 MB

english, 2010

13

[Science, Engineering, and Biology Informatics] Advances in Genomic Sequence Analysis and Pattern Discovery Volume 7 || R'MES: A Tool to Find Motifs with a Significantly Unexpected Frequency in Biological Sequences

Elnitski, Laura, Piontkivska, Helen, Welch, Lonnie R

Year:

2011

Language:

english

File:

PDF, 571 KB

english, 2011

14

Significant associations between driver gene mutations and DNA methylation alterations across many cancer types

Chen, Yun-Ching, Gotea, Valer, Margolin, Gennady, Elnitski, Laura, Fertig, Elana J.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.32 MB

english, 2017

15

Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression

Huang, Di, Petrykowska, Hanna M., Miller, Brendan F., Elnitski, Laura, Ovcharenko, Ivan

Journal:

Genome Research

Year:

2019

File:

PDF, 4.67 MB

2019

16

The Emergence of Pan-Cancer CIMP and Its Elusive Interpretation

Miller, Brendan, Sánchez-Vega, Francisco, Elnitski, Laura

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

17

Recurrent patterns of DNA methylation in the ZNF154, CASP8 , and VHL promoters across a wide spectrum of human solid epithelial tumors and cancer cell lines

Sánchez-Vega, Francisco, Gotea, Valer, Petrykowska, Hanna M, Margolin, Gennady, Krivak, Thomas C, DeLoia, Julie A, Bell, Daphne W, Elnitski, Laura

Journal:

Year:

2013

Language:

english

File:

PDF, 4.76 MB

english, 2013

18

[IEEE Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007) - Iowa City, IA, USA (2007.08.13-2007.08.15)] Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007) - Rigorous Mapping of Orthologous Bidirectional Promoters inVertebrates Defines their Evolutionary History

Yang, Mary Q., Taylor, James, Elnitski, Laura

Year:

2007

Language:

english

File:

PDF, 555 KB

english, 2007

19

CAGI experiments: modeling sequence variant impact on gene splicing using predictions from computational tools

Gotea, Valer, Margolin, Gennady, Elnitski, Laura

Journal:

Year:

2019

Language:

english

File:

PDF, 515 KB

english, 2019

20

Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins

Monique Rijnkels, Laura Elnitski, Webb Miller, Jeffrey M Rosen

Journal:

Year:

2003

Language:

english

File:

PDF, 809 KB

english, 2003

21

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - IEEE 7th BIBE Keynote: Promoter studies in the human genome: one perspective on an unfinished story

Yang, Mary Qu, Elnitski, Laura L.

Year:

2007

Language:

english

File:

PDF, 136 KB

english, 2007

22

Clustering of gene locations

Eli Walters, Naomi S. Altman, Laura Elnitski

Journal:

Computational Statistics & Data Analysis

Year:

2006

Language:

english

File:

PDF, 281 KB

english, 2006

23

Comparative analyses of bidirectional promoters in vertebrates

Mary Qu Yang, James Taylor, Laura Elnitski

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.33 MB

english, 2008

24

Genomic features defining exonic variants that modulate splicing

Adam Woolfe, James C Mullikin, Laura Elnitski

Journal:

Year:

2010

Language:

english

File:

PDF, 1.49 MB

english, 2010

25

The functional relevance of somatic synonymous mutations in melanoma and other cancers

Gotea, Valer, Gartner, Jared J., Qutob, Nouar, Elnitski, Laura, Samuels, Yardena

Journal:

Pigment Cell & Melanoma Research

Year:

2015

Language:

english

File:

PDF, 678 KB

english, 2015

26

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

LaBarre, Brenna A., Goncearenco, Alexander, Petrykowska, Hanna M., Jaratlerdsiri, Weerachai, Bornman, M. S. Riana, Hayes, Vanessa M., Elnitski, Laura

Journal:

Epigenetics & Chromatin

Year:

2019

Language:

english

File:

PDF, 1.20 MB

english, 2019

27

[IEEE 2009 Ohio Collaborative Conference on Bioinformatics (OCCBIO) - Cleveland, Ohio, USA (2009.06.15-2009.06.17)] 2009 Ohio Collaborative Conference on Bioinformatics - Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies

Lichtenberg, Jens, Alam, Mohit, Bitterman, Thomas, Drews, Frank, Ecker, Klaus, Elnitski, Laura, Evans, Susan, Geisler, Matt, Grotewold, Erich, Gu, Dazhang, Jacox, Edwin, Kurz, Kyle, Lee, Stephen S., L

Year:

2009

Language:

english

File:

PDF, 812 KB

english, 2009

28

Word-based characterization of promoters involved in human DNA repair pathways

Jens Lichtenberg, Edwin Jacox, Joshua D Welch, Kyle Kurz, Xiaoyu Liang, Mary Qu Yang, Frank Drews, Klaus Ecker, Stephen S Lee, Laura Elnitski, Lonnie R Welch

Journal:

Year:

2009

Language:

english

File:

PDF, 3.14 MB

english, 2009

29

Multi-species sequence comparison reveals dynamic evolution of the elastin gene that has involved purifying selection and lineage-specific insertions/deletions

Helen Piontkivska, Yi Zhang, Eric D Green, NISC Comparative Sequencing Program, Laura Elnitski

Journal:

Year:

2004

Language:

english

File:

PDF, 1013 KB

english, 2004

30

PipTools: A Computational Toolkit to Annotate and Analyze Pairwise Comparisons of Genomic Sequences

Laura Elnitski, Cathy Riemer, Hanna Petrykowska, Liliana Florea, Scott Schwartz, Webb Miller, Ross Hardison

Journal:

Year:

2002

Language:

english

File:

PDF, 384 KB

english, 2002

31

Efficient and Reliable Transfection of Mouse Erythroleukemia Cells Using Cationic Lipids

Laura Elnitski, Ross Hardison

Journal:

Blood Cells, Molecules, and Diseases

Year:

1999

Language:

english

File:

PDF, 210 KB

english, 1999

32

MethylToSNP: identifying SNPs in Illumina DNA methylation array data

LaBarre, Brenna A., Goncearenco, Alexander, Petrykowska, Hanna M., Jaratlerdsiri, Weerachai, Bornman, M. S. Riana, Hayes, Vanessa M., Elnitski, Laura

Journal:

Epigenetics & Chromatin

Year:

2019

File:

PDF, 1.20 MB

2019

33

Bidirectional Promoters as Important Drivers for the Emergence of Species-Specific Transcripts

Gotea, Valer, Petrykowska, Hanna M., Elnitski, Laura, Breuker, Casper

Journal:

Year:

2013

Language:

english

File:

PDF, 2.07 MB

english, 2013

34

Prediction-based approaches to characterize bidirectional promoters in the mammalian genome

Mary Qu Yang, Laura L Elnitski

Journal:

Year:

2008

Language:

english

File:

PDF, 283 KB

english, 2008

35

Functional analysis of synonymous substitutions predicted to affect splicing of the CFTR gene

Alexandra Scott, Hanna M. Petrykowska, Timothy Hefferon, Valer Gotea, Laura Elnitski

Journal:

Journal of Cystic Fibrosis

Year:

2012

Language:

english

File:

PDF, 480 KB

english, 2012

36

Orthology-driven mapping of bidirectional promoters in human and mouse genomes

Yang, Mary, Elnitski, Laura

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.78 MB

english, 2014

37

Unique Alterations of an Ultraconserved Non-Coding Element in the 3′UTR of ZIC2 in Holoprosencephaly

Roessler, Erich, Hu, Ping, Hong, Sung-Kook, Srivastava, Kshitij, Carrington, Blake, Sood, Raman, Petrykowska, Hanna, Elnitski, Laura, Ribeiro, Lucilene A., Richieri-Costa, Antonio, Feldman, Benjamin,

Journal:

Year:

2012

Language:

english

File:

PDF, 363 KB

english, 2012

38

Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts

Helen Piontkivska, Mary Q Yang, Denis M Larkin, Harris A Lewin, James Reecy, Laura Elnitski

Journal:

Year:

2009

Language:

english

File:

PDF, 1.90 MB

english, 2009

39

Erythroid specific activation of the ankyrin-1E promoter by the formation of a chromatin loop

David M. Bodine, Ashley N. Owen, Yelena Maksimova, Laura Elnitski, Clara Wong, Nancy E. Seidel, Amanda P. Cline, Patrick G. Gallagher

Journal:

Blood Cells, Molecules, and Diseases

Year:

2007

Language:

english

File:

PDF, 62 KB

english, 2007

40

[IEEE Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007) - Iowa City, IA, USA (2007.08.13-2007.08.15)] Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007) - Rigorous Mapping of Orthologous Bidirectional Promoters inVertebrates Defines their Evolutionary History

Yang, Mary Q., Taylor, James, Elnitski, Laura

Year:

2007

Language:

english

File:

PDF, 555 KB

english, 2007

41

The functional relevance of somatic synonymous mutations in melanoma and other cancers

Gotea, Valer, Gartner, Jared J., Qutob, Nouar, Elnitski, Laura, Samuels, Yardena

Journal:

Pigment Cell & Melanoma Research

Year:

2015

File:

PDF, 678 KB

2015

42

Robust Detection of DNA Hypermethylation of ZNF154 as a Pan-Cancer Locus with in Silico Modeling for Blood-Based Diagnostic Development

Margolin, Gennady, Petrykowska, Hanna M., Jameel, Nader, Bell, Daphne W., Young, Alice C., Elnitski, Laura

Journal:

The Journal of Molecular Diagnostics

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

43

Ascertaining regions affected by GC-biased gene conversion through weak-to-strong mutational hotspots

Gotea, Valer, Elnitski, Laura

Journal:

Year:

2014

Language:

english

File:

PDF, 612 KB

english, 2014

44

SigSeeker: a peak-calling ensemble approach for constructing epigenetic signatures

Lichtenberg, Jens, Elnitski, Laura, Bodine, David M.

Journal:

Year:

2017

Language:

english

File:

PDF, 612 KB

english, 2017

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